I'm trying to find a way to plot the transmission spectra of different analytes in photonic crystal fiber using Lumerical but I don't know how to do it.
You can place a Power Source and DFT Power monitor. Run the simulation for different analytes in PCF for the same wavelength range. After each simulation, export the transmission spectra data as text file.
You can draw combined plot from this data for all the analytes in a single plot using Mathematica.
Using 3D FDTD. Using time domain field monitor ypu can see how the transmission evolves with time and inorder to see the value of transmsion with respect to wavelength or frequency (SPECTRUM) you may use the frequency profile monitor.