How can I perform a population structure analysis by using HAPMAP file generated through GBS (Genotyping by sequencing). ?

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Adedayo Adeyanju

There are several ways to determine the structure of your population.

1. Structure 2.3.4 software. see link below

http://pritchardlab.stanford.edu/structure_software/release_versions/v2.3.4/html/install.html

2. You can do a PCA and use that for further analysis. PCA is used when you have a very large dataset as structure can sometimes take forever to run.

Apoorv Tiwari

@Adedayo Adeyanju

Thank you so much for kind support. I have done my work easily by using STRUCTURE software.