I tried to transform Physcomitrella patens with Em-GUS cassette by using PEG. After two round selection with 15µg/ml final concentration of hygromycin, I had few transformed lines. However, When I checked the cassette in those transformed lines by PCR with specific primers I did not see those lines have the cassette. I noticed some cells in the moss filaments died after first and second round selections with hygromycin and remained green cells in the same filament started branching when introduced to BCDA medium. Can I consider those survived cells as transforments or is it necessary to whole filament remain green in hydromycin? How can those lines resistant to hygromycin without having the cassette? Can someone explain me this? or any other suggestions to increase protoplast transformation?
Thanks in advance.