I used “adegnet package in R” and got five population groups of the pathogen. Now I would like to get member isolates in each group. How can get the members of each group with membership probability? I have attached picture of cluster for your consideration. Thank you.
Shu-Feng Li
Maybe this link is useful for you, http://adegenet.r-forge.r-project.org/
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Dipak Sharma-Poudyal
Thank you Shu-Feng, I looked at that link too but could not figure out.
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Lindsay Virginia Clark
If X is the name of your dataset, you can get assignments of individuals by X$assign. You can get the posterior probabilities (which are pretty much always 1 or 0) by X$posterior. Type ?dapc into your console for more information.
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