How can I export a phylogenetic tree in Phylip format from MEGA 5 software? Or any other software, through I can get a phylogenetic tree in Phlylip format?
1. You are using an old version of Mega. It is on version 7 right now.
2. Having said that, all versions of Mega allow you to save your tree in Newick format. This is a standard format that most programs can read trees in. I haven't used Phylip in a while but I'd be surprised if it cannot read Newick formatted trees.