A question from my PI:
"We would like to search a RNA-seq database(s) using a sequence to determine what tissues, cells etc a particular transcript is expressed in. I looked on the NCBI and UCSC Genome Bioinformatics sites but unless I am mistaken, it doesn’t appear a search of this type is possible. Does anyone know of a searchable RNA-seq database based on experiment type, cell type, disease type, etc.?"