Use NCBI eQTL phenome genome integrator tool called PhenGenI. You will have an option to include exons, intron, UTRs to identify all the SNPs. Good luck.
Use NCBI eQTL phenome genome integrator tool called PhenGenI. You will have an option to include exons, intron, UTRs to identify all the SNPs. Good luck.
There are many ways to do it, depends how you want to see the data & what is the purpose. The easiest way to do it to go to this link (http://www.ncbi.nlm.nih.gov/gene/3553). In the right hand side go down & you will see "SNP" & "SNP: GeneView" etc. These tabs will give you the list of all the SNPs present at the gene. In your case (IL-1 gene) it has 264 SNPs. Hope it helps.
http://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?locusId=3553
Ensembl genome browser is the way to go. :) You must configure it to show full introns + show SNPs. Look for the little wheel to the left.
I think that the better browser for SNPs is Ensembl. It 's integrated with "1000 Genomes Project", "Hap Map Project" and "Exome Sequencing Project" informations. You can configure the page to show all variations and their links to databases, so you can know the frequencies and associations for all SNPs tested.
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