How can I count the number of SNPs on 3 different samples using Galaxy?

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Upendra Kumar Devisetty

You need to provide more details before anyone can answer. For examples, what kind of samples, what kind of sequencing data, do you already have HapMap/VCF files etc.,

Alain Coletta

If you have a tabular file (samples are columns and SNPs are lines) and you want to count how many SNPs appear to be the same in the three samples?

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Bhagyashri Joshi

In galaxy you will get txt file in which SNP are listed in tabular format. so you can easily count it.