How can i calculate secondary structure propensity of amino acid sequences with values in percentage?

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Mangal Singh

You can try GOR

https://npsa-prabi.ibcp.fr/cgi-bin/npsa_automat.pl?page=npsa_gor4.html

Sushmita Basu

Thank you so much. It helped.

Prasanna Premadasa K M Gamage

Freq of aa in Helix/ Freq of residues to be in Helix

use Ab initio (Chau fasten/ GOR) or Homology based (nearest neighbour/ neural network) methods