How can I calculate EAF using freq_cases and freq_controls?

Mahantesh Biradar @Mahantesh-Biradar

27 July 2022 1 7K Report

How can I calculate EAF using freq_cases and freq_controls (effect allele freq in case and controls)

Mohamed-Mourad Lafifi

Dear Mohantesh Biradar,

I suggest you see the links on the topic.

Article Rivera A, Fisher SA, Fritsche LG, Keilhauer CN, Lichtner P, ...

Article Quality control and conduct of genome-wide association meta-analyses

https://zzz.bwh.harvard.edu/plink/anal.shtml

http://www.nealelab.is/blog/2017/9/11/details-and-considerations-of-the-uk-biobank-gwas

https://atlasgeneticsoncology.org/teaching/30076/hardy-weinberg-model

Best regards

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