How can I calculate EAF using freq_cases and freq_controls (effect allele freq in case and controls)
Dear Mohantesh Biradar,
I suggest you see the links on the topic.
Article Rivera A, Fisher SA, Fritsche LG, Keilhauer CN, Lichtner P, ...
Article Quality control and conduct of genome-wide association meta-analyses
https://zzz.bwh.harvard.edu/plink/anal.shtml
http://www.nealelab.is/blog/2017/9/11/details-and-considerations-of-the-uk-biobank-gwas
https://atlasgeneticsoncology.org/teaching/30076/hardy-weinberg-model
Best regards
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