Mahantesh Biradar

5 Questions 7 Answers 0 Followers

Questions related from Mahantesh Biradar

How can I calculate EAF using freq_cases and freq_controls?

How can I calculate EAF using freq_cases and freq_controls (effect allele freq in case and controls)

27 July 2022 7,117 1 View

How to classify the SNPs/gene loci as reported or novel?

I have a big list of significant SNPs (>30K) from a GWAS/meta-analysis. Can you please suggest what are some best ways to find the respective gene names and further classify them as already...

23 November 2021 1,169 3 View

How can I get chromosome number and position using SNP rs id?

I have a list of >1M SNP rs ids for which I would like to find the chromosome and the position. Can you please suggest how can I do this? Thanks in advance

12 October 2021 2,049 4 View

How to perform QC & association analysis on SNPs from multiple chromosome files?

Hello everyone, I have received the imputed data in the form of multiple files (Chromosome 1 to 22). There are 3 files for each chromosome (.bed, .bim, and .fam). I would like to know how I can...

12 June 2020 4,320 0 View

What are the possible ways to study the blood pressure response?

1. I have repeated measurements for SBP, DBP 2. From a longitudinal study 3. T2D patients treated with RAAS inhibitors 4. With genotype for 5 SNPs in around 400 of these patients 4. What are...

17 June 2016 1,848 3 View