Hello every body
I want to calculate the antrophy amount of a protein-protein complex using gmmpbsa module of gromacs. I can calculate binding energy but not antrophy.
If you have any exprInce,pleas tell me.
Thank you in advance
Dear Son Tung Ngo
Thank you for your complete answer.
I calculate the binding energy for a protein-protein complex in water using g_mmpnsa.
Now I have some questions about your answer.
Calculating antropy in vacuum dose not have any matter? It is in cordinance of binding energy calculation in water?
I now how i shoud perform explicit all atom MD. Pleas tell me how can I run an implicit one for my system using gromacs?do you have any toterial?
About normal mode analysis I don't have any experience. Coul you pleas tell me how could I perform it on my system step by step?
Thank you very much in advance
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