i have problem in analysis dssp plot. i have 117 amino acid in my protein structure but dssp plots show me 100 and 70 amino acid. i do not know why? pls help me. thanks a lot
Even though your sequence length is 117, the number of structured residue (no random coil) is less than that. Therefore, Y-axis max is set to smaller value automatically.
I am performing the analysis on the same but i got stuck while plotting the secondary structure graph. I wish to construct a similar as you've attached a scount.png file in the query. please guide me through that Ladan Mafakher