If rotavapor at 50 to 60 C under high vacuum (good oil pump) is not working! and if your compound dissolves better (loves more) in cyclohexane, heptane, hexane, pentane, 2,2,4-trimethylpentane or diethyl ether (all these not miscible with DMSO) you can extract your product in one of these solvents with a separating funnel and then more easily remove with rotavapor the more volatile solvent (i. e. pentane and diethyl ether evaporate under atmospheric pressure at 40-60 C).
Try with just solvents the rotavapor before you place your samples under vacuum.
Seems DMSO was a bad choice. The only thing which comes to mind is look for a DMSO miscible nonsolvent (preferably volatile) to precipitate the product. Wash the precipitate with the nonsolvent and dry.
donot know whether the problem was solved or not however lowering the temp to 10 0C wil freeze DMSO but not water you can filter the aqueous solution containing water soluble compound and separate DMSO as solid