I'm looking at levels of both Estrogen Receptor proteins in MDA-MB231 following a treatment. ERß has been fairly easy to probe for in Westerns with a rabbit polyclonal antibody I got from thermofisher. I got clear distinct bands. Probing for ER alpha, however, has been an absolute nightmare. I've tried three antibodies so far: the F-10 monoclonal mouse from santa cruz, the SP1 rabbit monoclonal from thermofisher (249R-1) and the Rabbit polyclonal from millipore (06-935). I have gotten a lot of non-specific binding with some of them, but no band around the expected ERα size... not even in the positive control (MCF-7). I've recently tried subcellular fractionation and ran a wb using nuclear lysates but it didn't help. Nothing in the MCF-7 lane either. My secondaries are solid, and my buffers have worked for me so far, looking at other proteins both nuclear and cytosolic. Any advice would be greatly appreciated. 

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