In the past we grew cells on uncoated coverslips to monitor NF-kB activation via immunofluorescence. Recently we started to use this method again, but switched to poly-D-lysine coated coverslips to improve cell attachment. Now many fewer TNF-alpha treated cells show bright, distinct nuclear staining. The staining looks more diffuse in both the nucleus and cytoplasm. In the past 100% of cells would have bright, distinct nuclear staining. Also, infection with a virus that used to activate NF-kB in almost every cell now activates NF-kB in only a small percentage of cells and again the staining is mostly diffuse. We will try uncoated coverslips again (cells don't adhere well), but I was wondering if anyone has had a similar issue.
Thanks!