Goal is to develop peptide vaccine , peptides are intrinsically linear, what info is gained through the tertiary structure prediction?
The tertiary structure may help you in finding the conformation B cell epitopes. The attached publication may help you further.
Article Structure and Immunogenicity of a Peptide Vaccine, Including...
You may use the latest tertiary structure prediction software for peptides. PEPstrMOD (http://osddlinux.osdd.net/raghava/pepstrmod/)
Thanks to all of your valuable suggestions.....!!
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