I was giving the command gmx mdrun -v -deffnm em while doing the energy minimization step but i encountered the error .
Fatal error:
There is no domain decomposition for 8 ranks that is compatible with the given
box and a minimum cell size of 8.09853 nm
Change the number of ranks or mdrun option -rdd or -dds
Look in the log file for details on the domain decomposition
For more information and tips for troubleshooting, please check the GROMACS
website at http://www.gromacs.org/Documentation/Errors
how to rectify this and what does this mean .......please help me out.
I am attaching the files below.
Hi, you may use the following command line:
>
Hopefully, that will help
Thnx for ur reply ...but what does -nt 1 stand for actually it has solved my issue....nd what does the error referring to ...I want to know that as well.
Based on the text of your error that states, "Change the number of ranks", we can control the number of ranks using the -nt option. However, I have no idea why this works.
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