Hi all,
I am interested to do a comparative genome analysis using EDGAR comparitive genomic tool. I have a novel bacteria whose genome sequence was obtained by us and now I was to do compare this novel strain´s genome to it´s phylogenetically closely related neighjbours. This bacterium belongs to the genus of Paracoccus.
I notice that EDGAR allowed to select the genomes which are already provided in their database but does not allow to add a sequence of any genome (may be I missed?). Could you please suggest me how can I do a genome comparison using thsi tool or if you can suggest some other tools (in case EDGAR does not allow to add new WGS to their database for comparison)?
I know about BRIG but that is not as cool as EDGAR since it provides Venn diagrams and many other results for better interpretation.
Thank you and Regards,
Timsy
Hello, I think you need to register to EDGAR and create a new project.
I have found the answer by contacting the author directly. They offer the service of private accounts. One can Email them the strains they want to analyze along with the phylogenetically related neighbouring strains (if want those to be included in the list) and they can create a private account for you to use their service (ofcourse your own strain WGS would be confidential).
Regards,
Timsy
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