Is it possible that one miRNA can birth from many chromosomes?

May be this is a very basic question for your all, but I was just wondering to get answer. Is it possible that one miRNA precursor with the same mature (identical) sequences has only one locus or...

05 June 2014 2,515 6 View

How to download publicly Chip-seq datasets for medicinal plants?

Need to work with Chip-seq data sets for medicinal such as Withania somnifera etc.

31 December 2013 1,489 5 View

I would like to have Genome coordinates in .gtf format. Is it possible to convert from .gff3 of miRBase? How?

Need miRNA.gtf genome cordinates for counting miRNA short reads by GFOLD.

09 October 2013 8,205 1 View

I would like to know basic pipeline (softwares/tools) for analysis of miRNA from SOLID sequencing data.

We have raw data in COLOR space format (.csfasta) and would like to profile and analyze it in order to find known and novel miRNA in sample. Further we are also looking for different expression...

03 April 2013 401 2 View

What kind of things can I do with a new gene when RefSeq does not show any similarity in blast?

We have found a novel gene during NGS (next generation sequencing by solid run) transcriptome analysis. So let me have your suggestions regarding bioinformatics.

01 February 2013 3,859 8 View

How can I dock RNA and protein? Can anyone give me some suggestion and tools information?

I have build small RNA 3D strucutre by using ERNA3D and wanted to dock it with some proteins that present in PDB database.

09 October 2012 3,590 3 View

How to overlap two protein/nucleic acid PDB and search particular domains inside reference PDB?

Can anyone recommend how to do this? I'm looking at protein and nucleic acid domains inside my modeled 3 D structure with already existed PDB.

03 April 2012 3,578 2 View

Can anyone please tell a good tool or server where build up the microRNA in the 3D structure form? And please send me the list of that tools.

There are many tools but problem to build when loop is present in the microRNA and also when separate it from protein. so i want better tools for modeling the microRNA.

31 December 2011 5,625 5 View

error in running a model in Abaqus

Excessive rotation of nodes in node set ErrNodeExcessRotation-Step1

17 August 2021 0 0 View

error in modelling model in Abaqus

Excessive rotation of nodes in node set ErrNodeExcessRotation-Step1

17 August 2021 0 0 View

MD MOE RMSD

How to calculate the RMSD values for a MD simulation using MOE?

07 August 2021 0 0 View

MD MOE RMSD

How to calculate the RMSD values for a MD simulation using MOE?

07 August 2021 0 0 View

MGL tools

20 June 2021 0 0 View

fatal error

When I tried to energy minimization my system, I got fatal error as below. Fatal error: Atomtype opls_116 not found Although I've already added this line: ; include water #include "oplsaa.ff/spc.itp" to [molecultype] directive in my topology.

16 June 2021 0 0 View

fatal error

When I tried to energy minimization my system, I got fatal error as below. Fatal error: Atomtype opls_116 not found Although I've already added this line: ; include water #include "oplsaa.ff/spc.itp" to [molecultype] directive in my topology.

16 June 2021 0 0 View

fatal error

When I tried to energy minimization my system, I got fatal error as below. Fatal error: Atomtype opls_116 not found Although I've already added this line: ; include water #include "oplsaa.ff/spc.itp" to [molecultype] directive in my topology.

16 June 2021 0 0 View

fatal error

When I tried to energy minimization my system, I got fatal error as below. Fatal error: Atomtype opls_116 not found Although I've already added this line: ; include water #include "oplsaa.ff/spc.itp" to [molecultype] directive in my topology.

16 June 2021 0 0 View

i have some problem with chtMultiRegionSimpleFoam

--> FOAM FATAL ERROR: Maximum number of iterations exceeded From function Foam::scalar Foam::species::thermo::T(Foam::scalar, Foam::scalar, Foam::scalar, Foam::scalar (Foam::species::thermo::*)(Foam::scalar, Foam::scalar) const, Foam::scalar (Foam::species::thermo::*)(Foam::scalar, Foam::scalar) const, Foam::scalar (Foam::species::thermo::*)(Foam::scalar) const) const [with Thermo = Foam::hConstThermo >; Type = Foam::sensibleEnthalpy; Foam::scalar = double; Foam::species::thermo = Foam::species::thermo >, Foam::sensibleEnthalpy>] in file /home/ubuntu/OpenFOAM/OpenFOAM-4.1/src/thermophysicalModels/specie/lnInclude/thermoI.H at line 66. FOAM aborting #0 Foam::error::printStack(Foam::Ostream&) at ??:? #1 Foam::error::abort() at ??:? #2 Foam::heRhoThermo >, Foam::sensibleEnthalpy> > > >::calculate() at ??:? #3 Foam::heRhoThermo >, Foam::sensibleEnthalpy> > > >::correct() at ??:? #4 ? at ??:? #5 __libc_start_main in "/lib/x86_64-linux-gnu/libc.so.6" #6 ? at ??:?

24 March 2021 0 0 View