I would like to have Genome coordinates in .gtf format. Is it possible to convert from .gff3 of miRBase? How?

Rupesh Kumar Kesharwani @Rupesh_Kumar_Kesharwani

10 October 2013 1 8K Report

Need miRNA.gtf genome cordinates for counting miRNA short reads by GFOLD.

Rupesh, don't know about miRBase, but for general GTF GFF conversion, see these pages: http://blog.nextgenetics.net/?e=27

The difference is mainly in the last/attribute column. Also GTF is for genes only, while GFF3 can carry any feature defined by Sequence Ontology.

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