Does it equal (mapped reads number / contig length)? Or something else?
When I used soap2 for performing alignment, the 2bwt-builder failed as my reference genome is too big. Does anyone know how to solve this problem? Thank you!
03 April 2018 8,327 0 View
I have a dataset, called data 1) data.dist=vegdist(data) # get the bray-curits distance 2) prediction.strength(data.dist,M=10,clustermethod=pamkCBI,diss=TRUE,usepam=TRU) # I hope to do the...
31 December 2015 4,713 2 View
Does any know how to convert solid csfasta to fasta file? And is there any problems involved in it? Thank you! The csfasta data is something like this: >...
31 December 2014 4,466 0 View
Any suggestion?
10 November 2014 5,689 7 View
The link is right here :http://www.hmpdacc.org/doc/sops/reference_genomes/metrics/Bacterial_CoreGenes_SOP.pdf I do not understand some points in it clearly: If the query is the amino acid...
09 October 2014 3,275 1 View
how to deal with the error as below? Read 30000 itemsError in est.cov(cov) :Cannot identify reliable trusted k-mer coverage peak. Please verify the integrity of your dataset (e.g. by running...
08 September 2014 2,211 0 View
I aim to be as skeptical as possible regarding whether a pair of orthologous genes results in the same phenotype in their different but related bacterial organisms under similar environmental...
05 August 2024 6,787 4 View
I am looking for software to help analyze SELEX NGS data, including alignment, sequence enrichment, and other related tasks. Can anyone recommend suitable tools or software? Best wishes, Waleed
30 July 2024 1,061 5 View
PeptiCloud (www.pepticloud.com) is a bioinformatic platform that allows researchers to organize and share their data for their projects as well as collaborate with others in one place. Through...
28 July 2024 4,762 2 View
Hi all. As a beginner in ChIP-seq experiments, I hope you understand that the following questions might be somewhat basic. I am planning to perform ChIP-seq or MeDIP-seq analysis to investigate...
28 July 2024 6,938 1 View
We have mice brains that were over-fixed due to old PFA used during perfusion. Thus, the synapses are no longer being labeled by the Synaptophysin (SY38) mAB. which works perfectly every other...
17 July 2024 7,767 3 View
Hi! I am currently working on a protein where I have selected residues within 10A of its bound ligand in pymol. However, I can not find a way to print out what residues are contained in that group...
15 July 2024 1,727 1 View
Silver Nanoparticles docking with alpha amylase and alpha glusidase .
11 July 2024 6,883 2 View
Give in detail with available literature and website links for submissions
27 June 2024 9,753 1 View
I am working on a paper for my bioinformatics class, where we are running an analysis of transcriptomics on A. thaliana col-0 about the difference in gene expression in the temperatures of 21 and...
12 June 2024 8,822 1 View
Hi, I am very new to Bioinformatics. Recently, I have the project that aims to perform taxonomic anlysis on raw reads from mixed samples taken from environment. For example, we perfromed NGS...
09 June 2024 6,537 3 View
