Does anyone know of an bioinformatic tool to find COGs in prokaryotic genome? and how can I associate the genes found with the general COG functional categories?
Thanks!
Dear Alexandra
PGDBj has some options: http://pgdbj.jp/en/ortholog-db.html
However, the normal COGnitor should do the task for you. You can still find orthologs across all eukaryotic spp.
Best
Prash
Hi,
You can find COG classes by
http://www.ncbi.nlm.nih.gov/Structure/bwrpsb/bwrpsb.cgi
Hi Alexandra,
You will find PGAT very useful. Check this weblink: http://tools.nwrce.org/pgat/
Kind regards
Olugbenga
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