Does anyone know how to perform a HMP protocol for "Bacteria core gene evaluation“?

Guojun Wu @Guojun-Wu-3

06 October 2014 1 3K Report

The link is right here :http://www.hmpdacc.org/doc/sops/reference_genomes/metrics/Bacterial_CoreGenes_SOP.pdf

I do not understand some points in it clearly:

If the query is the amino acid sequence, how can one use blastx?

Is the coverage = (alignment length/ core gene length)?

S. P. Germaa

Yes you are correct

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