I need to extract internal-associated membrane proteins from mammalian cell lines, eventually without using ultracentrifuge. My aim is to analyze protein expression by western-blotting.
We are doing membrane protein extraction by biotinylation and avidin pull-down. Good for WB. You can try milder lysis buffer and cell lysis method with this.
I have used cell lines and primary culture of human brain and brain tumors for whole cell protein isolation and I have used normal tris buffer with triton 1%. But for membrane proteins density gradient centrifugation / ultracentrifugation will be fine to proceed for protein isolation.