Does any have a suggestion for the best (quickest?!) way to find out if a particular mRNA sequence (from a paper) aligns to an exon or exon-exon?

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Joshua Beytebiere

I am not extremely familiar with this but I think you should be able to blast the sequence and find out.

Lisa Bradley

Yes, Blast was the first thing I tried. The sequence didn't give me a gene association though, which was odd too, but perhaps not uncommon.

Lisa Bradley What species is it for? You may also be able to pull up a genome browser get the sequence of a gene that way and then compare them against each other if it is for a species where the genome has been sequenced.