Does any body know a databse similar to pfam that offers HMM profiles built with HMMer2 algorithm?

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Moritz Jonathan Schmidt

I don't think there are any recently updated databases that still offer HMMER2 profiles. However, you could build your own from the Pfam-A seed alignment using the HMMBUILD program of the HMMER suite. ftp://ftp.ebi.ac.uk/pub/databases/Pfam/releases/Pfam31.0/Pfam-A.seed.gz

Mahmoud Hilali

Dear Moritz, Thanks a lot, that helped me a lot ..