My system consists of a horse shoe shaped peptide. (Two strands connected with a coil) And I want to create restraints between beads of two opposite strands.I created dis.itp to restrain beads I wanted to, and then added it to the topology file. It didnt seem to work as the coil twisted and structure didnt maintain its shape. Now I have created bonds between the beads of interest and it seems to work. Is it the right way to do it?

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