The viruses genome assembly quality was checked by CheckV. However, it is unclear if current database of CheckV is reliable. Is there any database-independent method for the evaluation of viral genome completeness?
We know some methods: checkv, VirFinder, Deepvirfinder, PPR-Meta, Seeker, Virsorter, Virsorter2, VIBRANT, Viralcomplete, PhaMer. Which one is database-independent and can evaluate viral genome completeness?
Thanks for your comments and suggestions!