Can anyone suggest me some bioinformatics or medical informatics conference that is held in US except ISCB?

03 April 2016 6,490 2 View

Are there any public databases regarding intron retention events in the genome?

10 November 2014 417 4 View

What are the large breast cancer data cohorts besides TCGA?

I would like to analyze breast cancer subtypes, and I know that TCGA is a good place to go. Still, I am wondering if there are some other large breast cancer data cohorts. Hopefully it includes...

10 November 2013 2,927 3 View

How to fit a heavy-tail distribution?

I have a RNA-seq count data which I suspect to have a Poisson distribution except that the right tail is quit 'heavy'. Does anyone know some heavy-tailed distribution? It would be better if it...

09 October 2013 7,239 6 View

Transcription factor enrichment tools?

I have a set of genes and I want to know which transcription factors are overrepresented in these genes. I know tools like MEME, but I have to provide the sequence rather than just gene names to...

09 October 2013 3,300 11 View

Maximum likelihood estimation for a bi-model data?

I have an expression data. My hypothesis is that it is a combination of two models, negative binomial(NB) and Poisson. Currently, I'd like to do a simulation. Firstly I want to estimate the...

08 September 2013 4,201 2 View

What are the causes of reads mapped to intergenic region in RNA-seq?

After we align our data onto genome using Tophat. I always see reads mapped to the intergenic region. It only accounts for a very small portion though. Could anyone enlighten me on this? What are...

06 July 2013 1,844 20 View

How to determine whether a gene is expressed in RNA-seq?

What statistic test I can use to prove that a gene is expressed in RNA-seq? For example, after RNA-seq, one gene has a RPM of 100, how can I determine this gene is expressed? Another way to think...

05 June 2013 1,617 10 View

Could anyone recommend to me one bioinformatics algorithms book or other related resource?

I am kind of stuck when trying to find new algorithms.

05 June 2013 7,233 4 View

Anyone use Kmeans clustering method on microarray gene expression data?

What difference would it have to do a standardized step before kmeans analysis?

03 April 2013 3,947 12 View

error in running a model in Abaqus

Excessive rotation of nodes in node set ErrNodeExcessRotation-Step1

17 August 2021 0 0 View

error in modelling model in Abaqus

Excessive rotation of nodes in node set ErrNodeExcessRotation-Step1

17 August 2021 0 0 View

MD MOE RMSD

How to calculate the RMSD values for a MD simulation using MOE?

07 August 2021 0 0 View

MD MOE RMSD

How to calculate the RMSD values for a MD simulation using MOE?

07 August 2021 0 0 View

MGL tools

20 June 2021 0 0 View

fatal error

When I tried to energy minimization my system, I got fatal error as below. Fatal error: Atomtype opls_116 not found Although I've already added this line: ; include water #include "oplsaa.ff/spc.itp" to [molecultype] directive in my topology.

16 June 2021 0 0 View

fatal error

When I tried to energy minimization my system, I got fatal error as below. Fatal error: Atomtype opls_116 not found Although I've already added this line: ; include water #include "oplsaa.ff/spc.itp" to [molecultype] directive in my topology.

16 June 2021 0 0 View

fatal error

When I tried to energy minimization my system, I got fatal error as below. Fatal error: Atomtype opls_116 not found Although I've already added this line: ; include water #include "oplsaa.ff/spc.itp" to [molecultype] directive in my topology.

16 June 2021 0 0 View

fatal error

When I tried to energy minimization my system, I got fatal error as below. Fatal error: Atomtype opls_116 not found Although I've already added this line: ; include water #include "oplsaa.ff/spc.itp" to [molecultype] directive in my topology.

16 June 2021 0 0 View

i have some problem with chtMultiRegionSimpleFoam

--> FOAM FATAL ERROR: Maximum number of iterations exceeded From function Foam::scalar Foam::species::thermo::T(Foam::scalar, Foam::scalar, Foam::scalar, Foam::scalar (Foam::species::thermo::*)(Foam::scalar, Foam::scalar) const, Foam::scalar (Foam::species::thermo::*)(Foam::scalar, Foam::scalar) const, Foam::scalar (Foam::species::thermo::*)(Foam::scalar) const) const [with Thermo = Foam::hConstThermo >; Type = Foam::sensibleEnthalpy; Foam::scalar = double; Foam::species::thermo = Foam::species::thermo >, Foam::sensibleEnthalpy>] in file /home/ubuntu/OpenFOAM/OpenFOAM-4.1/src/thermophysicalModels/specie/lnInclude/thermoI.H at line 66. FOAM aborting #0 Foam::error::printStack(Foam::Ostream&) at ??:? #1 Foam::error::abort() at ??:? #2 Foam::heRhoThermo >, Foam::sensibleEnthalpy> > > >::calculate() at ??:? #3 Foam::heRhoThermo >, Foam::sensibleEnthalpy> > > >::correct() at ??:? #4 ? at ??:? #5 __libc_start_main in "/lib/x86_64-linux-gnu/libc.so.6" #6 ? at ??:?

24 March 2021 0 0 View