I want to do a project on network modeling, interest especially lies in gene-gene network and miRNA-mRNA network. Could anyone recommend some literature to start with?
Dear Yuanhang Liu
I suggest you following articles
1. Dynamically regulated miRNA-mRNA networks revealed by exercise.
2. miRNA-mRNA network detects hub mRNAs and cancer specific miRNAs in lung cancer
3. MMpred: functional miRNA – mRNA interaction analyses by miRNA expression prediction.
4. [Methods in Molecular Biology] MicroRNA Protocols Volume 936 || miRNA and shRNA Expression Vectors Based on mRNA and miRNA Processing.
5. Joint analysis of miRNA and mRNA expression data.
6. Discovery of functional miRNA–mRNA regulatory modules with computational methods.
7. A biophysical miRNA-mRNA interaction model infers canonical and noncanonical targets.
8.miRNA-Mediated Gene Silencing by Translational Repression Followed by mRNA Deadenylation and Decay.
9.miRNA–miRNA interaction implicates for potential mutual regulatory pattern.
10.Inferring functional miRNA–mRNA regulatory modules in epithelial–mesenchymal transition with a probabilistic topic model.
11.Benzo[k]fluoranthene-induced changes in miRNA-mRNA interactions in human hepatocytes.
12.Reprogramming of miRNA networks in cancer and leukemia.
13.Inverse Correlation of miRNA and Cell Cycle-Associated Genes Suggests Influence of miRNA on Benign Thyroid Nodule Tumorigenesis.
Dear Yuanhang Liu
I suggest you following articles
1. Dynamically regulated miRNA-mRNA networks revealed by exercise.
2. miRNA-mRNA network detects hub mRNAs and cancer specific miRNAs in lung cancer
3. MMpred: functional miRNA – mRNA interaction analyses by miRNA expression prediction.
4. [Methods in Molecular Biology] MicroRNA Protocols Volume 936 || miRNA and shRNA Expression Vectors Based on mRNA and miRNA Processing.
5. Joint analysis of miRNA and mRNA expression data.
6. Discovery of functional miRNA–mRNA regulatory modules with computational methods.
7. A biophysical miRNA-mRNA interaction model infers canonical and noncanonical targets.
8.miRNA-Mediated Gene Silencing by Translational Repression Followed by mRNA Deadenylation and Decay.
9.miRNA–miRNA interaction implicates for potential mutual regulatory pattern.
10.Inferring functional miRNA–mRNA regulatory modules in epithelial–mesenchymal transition with a probabilistic topic model.
11.Benzo[k]fluoranthene-induced changes in miRNA-mRNA interactions in human hepatocytes.
12.Reprogramming of miRNA networks in cancer and leukemia.
13.Inverse Correlation of miRNA and Cell Cycle-Associated Genes Suggests Influence of miRNA on Benign Thyroid Nodule Tumorigenesis.
miRNA has two regulatory functions, one is degrade mRNAs, the other is suppress the translation of mRNA. In the first case we can find out the inverse correlation between miRNA and mRNAs. But in the second case, it might not be easy to find such relationship, for that the expression of mRNA might not change. Do you know any literature working on this kind of modeling?
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