I have seen examples of the Genepop format, but never for dominant markers. Could anyone, additionally, provide a clear explanation of the format's characteristics?
I am using Compare 4.6 software to perform PGLS on a large set of trait values using a known phylogeny (based on genetic distance; Taxa = 23, Traits = 110, phylogeny = 1). The problem is that when...
03 April 2015 919 1 View
The output includes results for PGLS at a given alpha value, Felsenstein's independent contrasts and TIPS (where phylogeny is not accounted for). In my case, mean PGLS carries high alpha values...
03 April 2015 3,412 0 View
In the interests of conserving time and resources, I would like to avoid performing replicates on every single sample, unless this is absolutely necessary. I have read in the literature that 5-10%...
07 August 2014 6,869 4 View
I am analysing data obtained from experiments conducted on a group of 10 individuals in triplicate. In each replicate, the number of data points are not necessarily the same for each of the...
11 December 2013 2,756 4 View
I am thinking about publishing work based on RAPD PCR. The problem I am having is that my gel pictures consist of several different experiments/primers (represented by 10 samples each) beside a...
07 August 2013 5,402 5 View
The program detects loci influenced by selection by comparing their Fst values to a neutral simulation.
08 September 2012 3,132 2 View
I am aware that the detection is based on Fst values. However, should these be obtained using another program and then be transferred to DfDist, Bayescan etc. or should AFLP binary data be used...
08 September 2012 3,320 0 View
Is this randomly decided by the researcher or is there a general principle they can base their decision on? I have read many papers looking for an answer but have yet to find an explanation on...
07 August 2012 3,418 7 View
I want to make an accurate determination of the best primer pairs to use in a full-scale analysis but I don't want to use any more time or resources than I need to on a preliminary screening. I...
07 August 2012 1,907 3 View
I aim to be as skeptical as possible regarding whether a pair of orthologous genes results in the same phenotype in their different but related bacterial organisms under similar environmental...
05 August 2024 6,787 4 View
I am looking for software to help analyze SELEX NGS data, including alignment, sequence enrichment, and other related tasks. Can anyone recommend suitable tools or software? Best wishes, Waleed
30 July 2024 1,061 5 View
PeptiCloud (www.pepticloud.com) is a bioinformatic platform that allows researchers to organize and share their data for their projects as well as collaborate with others in one place. Through...
28 July 2024 4,762 2 View
Hi all. As a beginner in ChIP-seq experiments, I hope you understand that the following questions might be somewhat basic. I am planning to perform ChIP-seq or MeDIP-seq analysis to investigate...
28 July 2024 6,938 1 View
Hi! I am currently working on a protein where I have selected residues within 10A of its bound ligand in pymol. However, I can not find a way to print out what residues are contained in that group...
15 July 2024 1,727 1 View
Silver Nanoparticles docking with alpha amylase and alpha glusidase .
11 July 2024 6,883 2 View
I am working on a paper for my bioinformatics class, where we are running an analysis of transcriptomics on A. thaliana col-0 about the difference in gene expression in the temperatures of 21 and...
12 June 2024 8,822 1 View
Hi, I am very new to Bioinformatics. Recently, I have the project that aims to perform taxonomic anlysis on raw reads from mixed samples taken from environment. For example, we perfromed NGS...
09 June 2024 6,537 3 View
Hi.. I am currently trying to look for an enzyme in a stingless bee proteome. However the query of known enzymes of the similar function is mainly from microorganisms - yeast and bacteria. I have...
03 June 2024 9,983 3 View
Constant touchstones following the protocol introduces a new dimension of bioethics to the bioinformatics about big ideas, modes of inquiry, intellectual traits and habits of mins but it is...
24 April 2024 8,739 3 View