Hello everyone,
I am facing problem in setting gradient temperature for my gene of interest. Melting temperature of both my primers is 69.5 degrees. I have obtained optimum temperature 61 degrees by doing in silico PCR run. Therefore, currently I am using gradient range from 55-65 degrees. However, I am not able to see the band while running Agarose Gel Electrophoresis. Additionally, GC content of my gene of interest and primers are in the range of 50-52%.
I am using 10ng/ul concentration in my PCR mix and Exprime Taq polymerase for PCR.
I would really be grateful for your answers
Thanks a lot in advance :)