Comparison of three-dimensional structures obtained in Swiss-Model?

Anzhelika Yudinceva @Anzhelika-Yudinceva

19 May 2024 1 4K Report

Good day!

Please tell me, is it correct to compare two structures obtained using homology modelling on the SwissModel website and then compare them using RMSD in PyMOL?

Waseem Ahmad Ansari

Anzhelika Yudinceva You have modeled the protein with the highest similarity score of the template. Then, the modeled structure would be aligned with reference template using PyMOL, and validated through the Ramachandran plot, and quality factor etc.

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