With many literatures and tools of bioinformatics to analysis single cell RNA data, I would like to ask if there is a complete pipeline for all the process of the analysis. It includes a downstream steps of co-expression network constructions within R programming.
Jagajjit Sahu
I tried but my supervisor is not agreeing using this package. So I got confused.
Dear Yousif A. Algabri
May I know if there is a reason for not agreeing with using WGCNA package. Also, you can try the package minet, which is basically Mutual Information based Network Inference. Researchers also prefer mutual information over Pearson's correlation in order to avoid overestimating edges. However, minet would not offer such diverse steps as WGCNA for co-expression network analysis. Using minet and modifying the available scripts you can design a pipeline tailored to your needs. Thanks
Dear Jagajjit Sahu
Thanks a lot for your detailed reply. i will try that package. keep in touch
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