Can anyone suggest some papers that use Multigroup Analysis with R Studio/STATA/Mplus softwares?

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Dominic Beaulieu-Prévost

We did multi group and longitudinal analyses in this one using Mplus. http://bmcmedresmethodol.biomedcentral.com/articles/10.1186/1471-2288-10-68

Matthew Barstead

If you are looking to perform mutligroup analyses within an SEM framework, then an option in R would be the lavaan package.

http://lavaan.ugent.be/tutorial/groups.html