I think it will nice if you can use LC -QTOF MS/MS to identify your metabolites. Using QTOF MS you can determine the accurate mass of your metabolites, than using Isotope pattern the Molecular formula can be predicted, after searching in (online) data base (Metlin etc), and comparing their fragmentation, the metabolite could be predicted. The metabolites can be further confirmed using authentic standards or (1D/2D-NMR after isolation)