How to choose the best segmentation model using the area under the precision recall curve, IOU and Dice metrics?

I am using several U-Net variants for a medical image segmentation task. I get the following values for the performance measures including Dice, IOU, Area under receiver-operating characteristic...

27 December 2020 7,273 3 View

How to perform pixel-level mappings between different views of chest x rays?

I have a frontal and lateral chest x ray projection for a given patient as shown in the attached figures. I am thinking about performing pixel-level mappings across these views. What are the steps...

26 October 2020 7,309 3 View

Do we have better image synthesis methods other than GANs to synthesize medical images?

We have seen researchers using various types of GANs to synthesize medical data. However, it is hard to train the GANs and also the synthesized images are no good compared to the actual since...

20 July 2020 6,963 4 View

What quantitative measures to use to explain variance across datasets?

I have observed that the performance of a machine learning model trained on a larger dataset is not as convincing as the one trained on a smaller (different) dataset. What quantitative measures I...

16 February 2019 9,398 4 View

How to extract features from different layers of GoogLeNet in Matlab?

Commonly we extract features using: net = googlenet() %Extract features featureLayer = 'pool5-drop_7x7_s1'; #the last layer before softmax How to extract features from a different layer earlier in...

29 November 2017 3,753 4 View

What are the factors to be considered while performing Homology modeling of a protein ? also suggest some best tools for above ?

23 September 2017 8,567 7 View

What are the factors to be considered while performing Molecular docking analysis ? what should be mentioed in result interpretation part ?

factors / parameters for molecular docking result interpretation

01 August 2017 1,618 2 View

Open source database for TB Images?

Do we have a open-source standardized database of TB microscopic sputum smear images?

24 July 2016 5,251 5 View

error in running a model in Abaqus

Excessive rotation of nodes in node set ErrNodeExcessRotation-Step1

17 August 2021 0 0 View

error in modelling model in Abaqus

Excessive rotation of nodes in node set ErrNodeExcessRotation-Step1

17 August 2021 0 0 View

MD MOE RMSD

How to calculate the RMSD values for a MD simulation using MOE?

07 August 2021 0 0 View

MD MOE RMSD

How to calculate the RMSD values for a MD simulation using MOE?

07 August 2021 0 0 View

MGL tools

20 June 2021 0 0 View

fatal error

When I tried to energy minimization my system, I got fatal error as below. Fatal error: Atomtype opls_116 not found Although I've already added this line: ; include water #include "oplsaa.ff/spc.itp" to [molecultype] directive in my topology.

16 June 2021 0 0 View

fatal error

When I tried to energy minimization my system, I got fatal error as below. Fatal error: Atomtype opls_116 not found Although I've already added this line: ; include water #include "oplsaa.ff/spc.itp" to [molecultype] directive in my topology.

16 June 2021 0 0 View

fatal error

When I tried to energy minimization my system, I got fatal error as below. Fatal error: Atomtype opls_116 not found Although I've already added this line: ; include water #include "oplsaa.ff/spc.itp" to [molecultype] directive in my topology.

16 June 2021 0 0 View

fatal error

When I tried to energy minimization my system, I got fatal error as below. Fatal error: Atomtype opls_116 not found Although I've already added this line: ; include water #include "oplsaa.ff/spc.itp" to [molecultype] directive in my topology.

16 June 2021 0 0 View

i have some problem with chtMultiRegionSimpleFoam

--> FOAM FATAL ERROR: Maximum number of iterations exceeded From function Foam::scalar Foam::species::thermo::T(Foam::scalar, Foam::scalar, Foam::scalar, Foam::scalar (Foam::species::thermo::*)(Foam::scalar, Foam::scalar) const, Foam::scalar (Foam::species::thermo::*)(Foam::scalar, Foam::scalar) const, Foam::scalar (Foam::species::thermo::*)(Foam::scalar) const) const [with Thermo = Foam::hConstThermo >; Type = Foam::sensibleEnthalpy; Foam::scalar = double; Foam::species::thermo = Foam::species::thermo >, Foam::sensibleEnthalpy>] in file /home/ubuntu/OpenFOAM/OpenFOAM-4.1/src/thermophysicalModels/specie/lnInclude/thermoI.H at line 66. FOAM aborting #0 Foam::error::printStack(Foam::Ostream&) at ??:? #1 Foam::error::abort() at ??:? #2 Foam::heRhoThermo >, Foam::sensibleEnthalpy> > > >::calculate() at ??:? #3 Foam::heRhoThermo >, Foam::sensibleEnthalpy> > > >::correct() at ??:? #4 ? at ??:? #5 __libc_start_main in "/lib/x86_64-linux-gnu/libc.so.6" #6 ? at ??:?

24 March 2021 0 0 View