How to choose the best segmentation model using the area under the precision recall curve, IOU and Dice metrics?

I am using several U-Net variants for a medical image segmentation task. I get the following values for the performance measures including Dice, IOU, Area under receiver-operating characteristic...

27 December 2020 7,273 3 View

How to perform pixel-level mappings between different views of chest x rays?

I have a frontal and lateral chest x ray projection for a given patient as shown in the attached figures. I am thinking about performing pixel-level mappings across these views. What are the steps...

26 October 2020 7,309 3 View

Do we have better image synthesis methods other than GANs to synthesize medical images?

We have seen researchers using various types of GANs to synthesize medical data. However, it is hard to train the GANs and also the synthesized images are no good compared to the actual since...

20 July 2020 6,963 4 View

May I know how to run BAPS software for genetic structure analysis?

I converted my genepop file into BAPS file using CREATE. I have read the manual yet unable to understand how to proceed further. Any recommendations would be helpful.

20 April 2020 6,166 1 View

What quantitative measures to use to explain variance across datasets?

I have observed that the performance of a machine learning model trained on a larger dataset is not as convincing as the one trained on a smaller (different) dataset. What quantitative measures I...

16 February 2019 9,398 4 View

How many mouse splenocytes were stored in each cryovials?

I am planning to cryopreserved mice splenocytes in 10% DMSO +90% FBS media ( 1ml is added in each vial) for future experiments. I am NOT sure what's minimum number of mice splenocytes cells should...

03 December 2018 5,771 1 View

Can we perform Flow cytometry based NK cell cytotoxicity assay using melanoma cell line (B16F10)?

I did Flow Cytometry based NK cell cytotoxicity assay using anti-CD71 targets K562 and U266 cell line. Now I want to repeat same experiment using melanoma cell line (B16F10). Would you please...

06 December 2017 1,724 3 View

How to extract features from different layers of GoogLeNet in Matlab?

Commonly we extract features using: net = googlenet() %Extract features featureLayer = 'pool5-drop_7x7_s1'; #the last layer before softmax How to extract features from a different layer earlier in...

29 November 2017 3,753 4 View

define Cloud Computing and Data Masking Techniques?

hi anyone working on data masking techniques?

27 November 2017 4,103 3 View

What are the factors to be considered while performing Homology modeling of a protein ? also suggest some best tools for above ?

23 September 2017 8,567 7 View

No title

01 March 2021 3,905 5 View

Anyone that can help with Maxquant TMT16plex which is missing?

Hi I am very new to proteomics analysis. I have got raw files from core facility running thermofisher TMT 16plex 4 hours. I cannot find on maxquant the option TMT16Plex there is only up to 11...

25 February 2021 1,675 3 View

Fractional impervious surface (FIS) map ?

Need Help Does anyone Know how to make a Fractional impervious surface (FIS) map from NDVI map, in ArcGIS environment? Thanks in advance

24 February 2021 8,455 2 View

Can you mention any source which presents an updates forest-fire hazard or vulnerability map of North-East India?

There exists a confusion of generating fire-hazard maps with MODIS data as that way, we cannot distinguish between shifting agriculture and wildfires. I am looking for a source that provides me...

22 February 2021 9,616 2 View

Historical wind data/map?

Hello All, I am looking for the historical wind data/map (mainly the year 2020-2021). I would like to look at the wind value and direction for the specifics locations within the US for the...

18 February 2021 9,543 4 View

How can we quantify martensite in Ferrous and Titanium alloys?

How can we quantify metastable phases like martensite in Ferrous and Titanium alloys, in relation to their stable counterpart For example in EBSD, XRD, Optical? Eg, Martensite and Ferrite maps.

09 February 2021 7,572 3 View

How to perform HeatMaps of RNAseq data?

Hey, Does anyone know an easy tool (website, software ) to create a heat map for RNA-seq Data. Thank you

04 February 2021 5,979 4 View

Can anyone suggest a numerical method to calculate perimeter of a contour in charge density contour maps?

Hi i have drawn the charge density contour maps using VESTA taking CHGCAR files from VASP. Now, What I Want is that I need to know the perimeter of each contour appearing in the cross section 2D...

04 February 2021 3,637 1 View

In which group does Fine loamy, Coarse Loamy, Coarse Silty and Fine Soil falls?

I am preparing HSG map for which I need to classify the above soils into HSG group. Just want to confirm their classification i.e in which category they fall?

03 February 2021 9,902 1 View

Does Location Map of Informal Settlements in South Africa exist?

I urgently need a map that shows the point locations of informal settlements in South Africa. I am currently working on a study that seeks to relate protests location to the location of informal...

02 February 2021 4,113 7 View