Hi, I am working on a theoretical quantitative genetics paper exploring rank distributions of parents and progeny based off of genetic (narrow heritability) , GXE, and environmental (random, maternal effects) influences. I want to test some data but public datasets of complete (not summarized by moments or correlations) data of parent-progeny phenotypes are hard to find.
Ideally, I would like a data set with animal ID, animal sex, sire and dam ID, sire and dam phenotype, and animal phenotype. Best case would be an approximately outbred population but I accept a lot of agricultural and lab animals have some inbreeding present so I can take what I can get a long as it is not a consciously inbred line or with frequent backcrossing, etc.
Also, the number of progeny per coupling is an important variable so animals with a moderate number of offspring (5-10) per female would be appreciated.
Thanks for any help.
I have worked on Kashmir Merino sheep and corriedale sheep data spread over 21 years and 49 years. I can shara DATA on Kashmir Merino easly.
Anna Wolc , thanks for the link but parent-progeny phenotype data is best. I see you are at Iowa State, are there any archives there from Jay Lush and other research, for example the Holstein breeding work?
Mubashir Ali Rather thank you! Which phenotypes are measured? Please email me at [email protected]
I have raw data from my Seppala Siberian breeding program, but it is as I said very raw data I have not done any PCR work on my own dogs yet but I have phenotype information going back to the 1800's mostly coat and eye color. Many breeders still use punnett squares.
Dear Anna Wolc
Do you know a Free database that provides users with GWAS (SNPs + phenotypic data)?
Hi Mohammad,
These papers come with data
https://www.frontiersin.org/articles/10.3389/fgene.2020.00134/full
https://pubmed.ncbi.nlm.nih.gov/33871030/
Article A Common Dataset for Genomic Analysis of Livestock Populations
. You can also check the BLR package, there are some data included inGood luck
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