I want access to a database where proteins can be searched and the presence of ubiquitination and other parameters (ub link, mono/poly/branched ubi...)
Shafagat Mahmudova
Dear Alejandro Correa Sáez ,
The 2004 Nobel Prize in Chemistry was awarded to Aaron Ciechanover, Avram Hershko and Irwin Rose for their seminal discovery of the ubiquitin conjugation that targets proteins for degradation in an ATP-dependent manner
Article UUCD: A family-based database of ubiquitin and ubiquitin-lik...
Regards,
Shafagat
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Mohamad Dzul Syakimin Mohd Noor
There are several databases that provide information about protein ubiquitination. Some options include:
- UbiProt: This is a comprehensive database of ubiquitination sites and ubiquitin chain topologies in the human proteome. It contains data from multiple sources, including literature, high-throughput experiments, and manual curation.
- UbiSite: This database is specifically focused on ubiquitination sites and their functional consequences. It provides information about the type and position of ubiquitination sites, as well as the context in which they occur.
- UniProt: This is a well-known database of protein information, including information about ubiquitination. It provides data about ubiquitination sites and other post-translational modifications, as well as information about the protein's function and structure.
- UbiDb: This database provides information about ubiquitin-specific proteases and deubiquitinating enzymes, as well as their substrates and regulatory mechanisms. It also includes information about ubiquitin-like proteins and their functions.
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