I want to use Conditional Random Fields for Classification.
In more detail I want to classify every amino acids of a protein sequence as boundary domain or not.
I read the background theory but I didn't found any practical examples.
How about reading the following -
Application oriented papers
(1) http://bioinformatics.oxfordjournals.org/content/23/5/597.full.pdf+html
(2) http://biochem218.stanford.edu/Projects%202007/Emerson.pdf
(3) http://sydney.edu.au/engineering/it/research/tr/tr650.pdf
Tutorial papers
(1) http://homepages.inf.ed.ac.uk/csutton/publications/crftut-fnt.pdf
search for application oriented references. Hope it helps
Please refer link below
http://crfpp.googlecode.com/svn/trunk/doc/index.html
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