Can anybody recommend some population genomic tools for nanopore specific data analysis?

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Elias Oziolor

Well yes I have! I mean nanopore. Thanks for catching that!

Absolutely, yes I am wondering if there are good practices for the assembly/mapping and calling in handling nanopore data. You're right, the population genomics analysis I will be doing is downstream, but I wanted to mention it in case some of the inefficiencies of nanopore data have to be considered more strongly in the upstream processing in order for them not to affect the downstream population genomics analysis. If you have any advice, that would be much appreciated! Thank you!