With respect to reagent preparation, the use of ethanol as a solvent is better than methanol. The solubility of dye also depends on the brand and its purity rate.
Ethanol or methanol, either of the two can be used as the role of both methanol and ethanol in the Bradford reagent is to act as a reacting functional group, since the OH at the end of the ethanol/methanol can be depronated. Both the solvents help prevent aggregation of proteins during the assay.
The quality of ortho-phosphoric acid greatly affects the quality of the reagent. Acid is more important than alcohol. Ortho-phosphoric acid changes over time.
That is the second time that I read that Ethanol an Methanol can be deprotonated. Bradford uses ~13% phosphoric acid (w/w), how is it relevant that the alcohols can be deprotonated? As far as I know it is not required for a chemical reaction but just for dissolving the CBB.
In my hands I found that decreasing the CBB concentration from 100mg/L in the original recipy, to 70-80 mg/L is improving the staining and reducing the background.