03 November 2022 1 3K Report

Hi everyone,

I am currently trying to batch-process some images using FIJI.

I would like to produce an average intensity of my Z stacks and then identify the number of maxima on the image.

I have used the macro recorder to obtain some code for this:

run("Z Project...", "projection=[Average Intensity]");

run("Find Maxima...", "prominence=20 output=[Point Selection]");

run("Measure");

I would like to save the image with the identified maxima points as well as the output of the run("Measure") function, which outputs a table with information e.g. mean, min etc. of each maxima.

When I run my current code the image output saves but the table does not.

I have tried to add the following to my code: saveAs("Results", " etc. but this poses an issue because every time a new image is processed it does save the table but overrides the table from the previous image as they're saved by the same name!

Is there a way to save the output of different images by a different name?

Or a way to save the result table alongside the image output without having to specify a name for it to be saved under?

Thank you so much! :)

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