I am running BAPS v6.0 to explore population structure in my study species. I am performing a population mixture analysis using the spatial clustering of individuals module. As input, I have a multiple sequence alignment in FASTA format and a text file with coordinates of sampling locations of my individuals.

Before running the analysis, I have set the output file in the "File" menu in the GUI. According to the manual, numerical results should then be written to a .txt file in this directory.

The analyses run fine, and the results appear in the console. However, they are not written to a .txt file in the directory specified above, and searching my computer for the expected file name turns up nothing, so it is not simply being written somewhere else.

I wonder if anybody else has encountered this problem?