ARLEQUIN: ΦST or FST fixation index?

03 March 2017 1 4K Report

ΦST or FST fixation index?

I'm looking for genetic differentiation between 6 different populations of ticks. I'm using the cytochrome oxydase C subunit I (COI) haplotype data in ARLEQUIN.

Can anyone help me to identify the setting of ΦST in arlequin (see the attached)?

How can I identity that parameter in the arlequin output? because I'm not able to find it written ΦST.

Thanks

Gaston Amzati

Thank you Dear Arthur,

I have haplotype sequences in my input, imported from DnaSP.

Is it still okey for ΦST estimation?

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