Looking to perform TEM on tissues that have already been processed via RNAScope. Are there concerns with viral and/or cellular degradation from RNAScope reagents that may prevent TEM from detecting the molecularly-confirmed virus?
I have gotten somewhat useful results out of this once, in that I could at least identify viral capsids in infected cells, but it obviously depends on what information you exactly need for your analysis.
The treatment is harsh and thus the ultrastructural preservation is ... bad. Expect the lipids to be pretty much gone, and the protease treatment doesn't help either ;)