I am working on hepatocellular carcinoma (HCC). Does anyone know if there are scRNAseq data of single cells isolated from whole adjacent liver/tumor tissues that published online? Thanks for help!
Thanks. Which paper you mentioned? The paper published by Dr Zhang at Cell focused on T cell scRNAseq only.
GEPIA mentions TCGA and GTEx. https://academic.oup.com/nar/article/45/W1/W98/3605636
The TCGA site mentions that they have characterized HCC into a dataset, but I couldn't find it with the link they provided. This may be a good starting point.
On the GEPIA site they have a differential expression analysis of HCC here: http://gepia.cancer-pku.cn/detail.php?clicktag=degenes###
Let me know if this helps or not. I can keep looking for other options if this doesn't meet your needs.
Dear Dr Gosnell,
Thanks s much for help! I found 371 HCC and 50 Non-tumor tissue/liver tissue data from TCGA and GEPIA as u suggested. Thanks again and good luck to you as well.
Jingying
Dear Dr Gosnell,
I also found GEPIA has liver tissue RNAseq data from non-cancer patients for comparison. Thanks so much!
Jingying
Not a problem Jingying Zhou . Glad it helped and I hope it'll provide all the data you need.
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