Anyone knows the core conserved moifs of each domains of polyketide synthases(PKS)?

09 July 2019 1 7K Report

I want to analyse some protein sequences to see if they have PKS activity.

So does anyone knows the core conserved sequences of each domains of polyketide synthases?Or if possible ,how can I obtain the motif by myself through the Internet?

Pankaj Kumar Singh

You can try

memesuite: http://meme-suite.org/

You can generate a tertiary model of protein and use PDBemotif , its very useful.

ScanProsite: https://prosite.expasy.org/scanprosite/

motifscan:https://myhits.isb-sib.ch/cgi-bin/motif_scan

You can even try SMART : http://smart.embl-heidelberg.de/

I hope these will suffice your work.

Best Wishes

Pankaj

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