I'm working on the STR and have some .fsa files that need to be done with fragment analysis. I have used the Genemapper ID-X software before, but there is no such software in the new lab. I have tried to use the Peakscanner, but it doesn't work on Mac.
So, is there any user-friendly software for Mac to analyze the .fsa file?
Thanks in advance!
Bests,
Shuang
Absolutely, there are several software alternatives to Genemapper for fragment analysis on Mac. Here are a few popular options:
- Geneious: This bioinformatics platform offers a wide range of features, including a dedicated microsatellite plugin for fragment analysis. It has a user-friendly interface and is compatible with Mac, Windows, and Linux. Geneious offers a free 30-day trial, after which a paid license is required.📷Opens in a new window📷www.geneious.comGeneious software
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- OSIRIS: Developed by the National Center for Biotechnology Information (NCBI), OSIRIS is a free and open-source software specifically designed for fragment analysis. It can analyze data generated from ABI machines and is compatible with Mac and Windows.📷Opens in a new window📷osirissoftware.comOSIRIS software
- GeneMarker: This software offers a comprehensive solution for genotype analysis, including fragment analysis. It is compatible with Mac, Windows, and Linux and provides a user-friendly interface for analyzing fragment data. GeneMarker offers a free trial, with paid licenses available for continued use.📷Opens in a new window📷www.medicalexpo.itGeneMarker software
The best option for you will depend on your specific needs and budget. Here's a quick comparison to help you decide:
FeatureGeneiousOSIRISGeneMarkerPriceFree trial, then paid licensesFree and open-sourceFree trial, then paid licensesPlatformMac, Windows, LinuxMac, WindowsMac, Windows, LinuxFeaturesWide range of bioinformatics toolsFragment analysis focusedGenotype analysis suiteEase of useUser-friendlyModerately easy to useUser-friendly
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